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Proteomics Research 07/10/2020 15:55
MSFragger is FAST. Like really really fast. As features have piled up on MSFragger to make it more useful, it has slowed down, but it is still a program that is darned fast for a desktop CPU program. So....it says something....I'm not sure what....something, for sure....when a 2 hours TIMMYTOF run with PASEF takes 70 minutes, on average, to process with MSFragger and that is massively outstripping the competition. Good news -- there is another tool to process PASEF-TOF data with! Bad news -- you still have to be patient. This data is dense!

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